Default Project
Experiment View
OverviewSEEK ID: https://datahub-usecase.elixir-belgium.org/projects/1
Public web page: Not specified
Organisms: No Organisms specified
FAIRDOM PALs: No PALs for this Project
Project created: 14th Feb 2022
TagsThis item has not yet been tagged.
Related items
Projects: Default Project, ENA submission example, ENA upload tool project
Institutions: Default Institution, VIB
Projects: Default Project, ENA submission example, Expression data, ENA upload tool project
Institutions: Default Institution, VIB
Projects: Default Project, ENA submission example
Institutions: Default Institution, VIB
ROR ID: Not specified
Department: Not specified
Country: 
United Kingdom
City: Not specified
Web page: Not specified
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , title (String) *, study_type (Controlled Vocabulary - ENA study_type) *, study_abstract (String) *, pubmed_id (Integer) , submission_date (String)
Not specified
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , title (String) *, study_alias (String) *, sample_alias (String) *, design_description (String) *, library_name (String) *, library_strategy (Controlled Vocabulary - ENA library_strategy) *, library_source (Controlled Vocabulary - ENA library_source) *, library_selection (Controlled Vocabulary - ENA library_selection) *, library_layout (Controlled Vocabulary - ENA library_layout) *, insert_size (String) , library_construction_protocol (String) *, platform (Controlled Vocabulary - ENA platform) *, instrument_model (Controlled Vocabulary - ENA instrument_model) *, submission_date (String)
Not specified
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , experiment_alias (String) *, file_name (String) *, file_format (Controlled Vocabulary - ENA file_format) *, file_checksum (String) , submission_date (String)
Not specified
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature. Based on ENA's Sample checklist ERC000011.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , title (String) *, scientific_name (String) , taxon_id (Integer) *, sample_description (String) *, cell_type (String) , dev_stage (String) , germline (String) , tissue_lib (String) , tissue_type (String) , collection_date (String) , isolation_source (String) , lat_lon (String) , collected_by (String) , geographic location (country and/or sea) (String) , geographic location (region and locality) (String) , identified_by (String) , environmental_sample (Controlled Vocabulary - ENA environmental_sample) , mating_type (String) , sex (String) , lab_host (String) , host scientific name (String) , bio_material (String) , culture_collection (String) , specimen_voucher (String) , cultivar (String) , ecotype (String) , isolate (String) , sub_species (String) , variety (String) , sub_strain (String) , cell_line (String) , serotype (String) , serovar (String) , strain (String) , submission_date (String)
Not specified
Input (Registered Sample List) *, Name of a protocol with data file output (String) *, Name of protocol parameter 1 (String) *, Data file Name (String) *, Data file characteristic 1 (String) *
Input (Registered Sample List) *, Name of a protocol with samples as outputs (String) *, Name of protocol parameter 1 (String) *, Sample Name (String) *, Sample Characteristic 1 (String) *
Input (Registered Sample List) *, Name of a protocol with material output (String) *, Name of protocol parameter 1 (String) *, Output material Name (String) *, Output material characteristic 1 (String) *
Source Name (String) *, Source Characteristic 1 (String) *
Input (Registered Sample List) *, nucleic acid sequencing (String) *, Raw Data File (String) *, file_name (String) *, file_type (Controlled Vocabulary - file_type) *, file checksum (String) , accession (String) , submission_date (String) , status (Controlled Vocabulary - status)
