SEEK ID: https://datahub-usecase.elixir-belgium.org/projects/1
Public web page: Not specified
Organisms: No Organisms specified
FAIRDOM PALs: No PALs for this Project
Project created: 14th Feb 2022
Related items
Projects: Default Project, ENA submission example, ENA upload tool project
Institutions: Default Institution, VIB
Projects: Default Project, ENA submission example, Expression data, ENA upload tool project
Institutions: Default Institution, VIB
Projects: Default Project, ENA submission example
Institutions: Default Institution, VIB
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , title (String) *, study_type (Controlled Vocabulary - ENA study_type) *, study_abstract (String) *, pubmed_id (Integer) , submission_date (String)
Not specified
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , title (String) *, study_alias (String) *, sample_alias (String) *, design_description (String) *, library_name (String) *, library_strategy (Controlled Vocabulary - ENA library_strategy) *, library_source (Controlled Vocabulary - ENA library_source) *, library_selection (Controlled Vocabulary - ENA library_selection) *, library_layout (Controlled Vocabulary - ENA library_layout) *, insert_size (String) , library_construction_protocol (String) *, platform (Controlled Vocabulary - ENA platform) *, instrument_model (Controlled Vocabulary - ENA instrument_model) *, submission_date (String)
Not specified
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , experiment_alias (String) *, file_name (String) *, file_format (Controlled Vocabulary - ENA file_format) *, file_checksum (String) , submission_date (String)
Not specified
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature. Based on ENA's Sample checklist ERC000011.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , title (String) *, scientific_name (String) , taxon_id (Integer) *, sample_description (String) *, cell_type (String) , dev_stage (String) , germline (String) , tissue_lib (String) , tissue_type (String) , collection_date (String) , isolation_source (String) , lat_lon (String) , collected_by (String) , geographic location (country and/or sea) (String) , geographic location (region and locality) (String) , identified_by (String) , environmental_sample (Controlled Vocabulary - ENA environmental_sample) , mating_type (String) , sex (String) , lab_host (String) , host scientific name (String) , bio_material (String) , culture_collection (String) , specimen_voucher (String) , cultivar (String) , ecotype (String) , isolate (String) , sub_species (String) , variety (String) , sub_strain (String) , cell_line (String) , serotype (String) , serovar (String) , strain (String) , submission_date (String)
Not specified
Input (Registered Sample List) *, nucleic acid sequencing (String) *, Raw Data File (String) *, file_name (String) *, file_type (Controlled Vocabulary - file_type) *, file checksum (String) , accession (String) , submission_date (String) , status (Controlled Vocabulary - status)
Input (Registered Sample List) *, sample collection (String) *, Sample Name (String) *, title (String) *, sample_description (String) *, collection date (ENA custom date) *, accession (String) , submission_date (String) , status (Controlled Vocabulary - status)
Input (Registered Sample List) *, library_construction (String) *, library_construction_protocol (String) , title (String) *, design_description (String) , library_name (String) *, library_source (Controlled Vocabulary - library_source) *, library_strategy (Controlled Vocabulary - library_strategy) *, library_selection (Controlled Vocabulary - library_selection) *, library_layout (Controlled Vocabulary - library_layout) *, insert_size (String) , platform (Controlled Vocabulary - platform) *, instrument_model (Controlled Vocabulary - instrument_model) *, accession (String) , submission_date (String) , status (Controlled Vocabulary - status)
Source Name (String) *, geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea)) *, taxon_id (Integer) *
Source Name (String) *, Title (String) *, Description (String) *, tax_id (String) *, organism (String) , ploidy (Controlled Vocabulary - ploidy) *, number of replicons (Integer) *, extrachromosomal elements (Integer) , estimated size (Integer) *, collected_by (String) , collection date (String) *, geographic location (altitude) (String) , geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea)) *, geographic location (latitude) (String) *, geographic location (longitude) (String) *, geographic location (region and locality) (String) , identified_by (String) , geographic location (depth) (String) , environment (biome) (Controlled Vocabulary - environment (biome)) , environment (feature) (String) , geographic location (elevation) (String) , source material identifiers (String) , isolation and growth condition (String) *, propagation (String) , plant structure (Controlled Vocabulary - plant structure) *, plant developmental stage (Controlled Vocabulary - plant developmental stage) *, sampled age (String) , sample phenotype (String) , sample health state (Controlled Vocabulary - sample health state) , sample disease status (String) , sample disease stage (String) , sample wet mass (String) , sample dry mass (String) , sample height (String) , sample length (String) , growth facility (Controlled Vocabulary - growth facility) , sample capture status (Controlled Vocabulary - sample capture status) , genotype (String) , genetic modification (String) , organism common name (String) , subspecific genetic lineage rank (String) , subspecific genetic lineage name (String) , biological status (String) , organism phenotype (String) , ancestral data (String) , source material description (String) , biotic relationship (String) , growth habit (Controlled Vocabulary - growth habit) , plant sex (String) , climate environment (String) , gaseous environment (String) , seasonal environment (String) , soil_taxonomic/FAO classification (String) , soil_taxonomic/local classification (String) , soil_taxonomic/local classification method (String) , soil type (Controlled Vocabulary - soil type) , soil type method (String) , drainage classification (Controlled Vocabulary - drainage classification) , texture (String) , texture method (String) , soil water content (String) , soil pH (String) , plant growth medium (String) *, rooting conditions (String) , culture rooting medium (String) , rooting medium macronutrients (String) , rooting medium micronutrients (String) , rooting medium organic supplements (String) , rooting medium carbon (String) , rooting medium regulators (String) , rooting medium solidifier (String) , rooting medium pH (String) , air temperature regimen (String) , antibiotic regimen (String) , chemical mutagen (String) , fertilizer regimen (String) , fungicide regimen (String) , gravity (String) , growth hormone regimen (String) , herbicide regimen (String) , humidity regimen (String) , mineral nutrient regimen (String) , non-mineral nutrient regimen (String) , pesticide regimen (String) , pH regimen (String) , radiation regimen (String) , rainfall regimen (String) , salt regimen (String) , standing water regimen (String) , watering regimen (String) , water temperature regimen (String) , plant treatment (String) , light regimen (String) , biotic regimen (String) , mechanical damage (String) , chemical administration (String) , perturbation (String) , submission date (String) , status (Controlled Vocabulary - status) , accession (String)