ENA submission example
Experiment View
OverviewA project containing an example of submission to ENA using the ENA export feature. A guide to the feature can be found at the following link
SEEK ID: https://datahub-usecase.elixir-belgium.org/projects/2
Public web page: https://datahub.help.elixir-belgium.org/usecase/help/user-guide/datahub-ena-export.html
Organisms: No Organisms specified
FAIRDOM PALs: No PALs for this Project
Project created: 16th Feb 2022
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Related items
Projects: Default Project, ENA submission example, ENA upload tool project
Institutions: Default Institution, VIB
Projects: Default Project, ENA submission example, Expression data, ENA upload tool project
Institutions: Default Institution, VIB
Projects: Default Project, ENA submission example
Institutions: Default Institution, VIB
Zip file containing an example output of the ENA export feature
Creator: Rafael Andrade Buono
Submitter: Rafael Andrade Buono
DownloadZip file containing dummy files for a test submission of raw reads to the European Nucleotide Archive (ENA)
Creator: Rafael Andrade Buono
Submitter: Rafael Andrade Buono
Filled example of ENA_run
Creator: Rafael Andrade Buono
Submitter: Rafael Andrade Buono
Filled example of ENA_experiment
Creator: Rafael Andrade Buono
Submitter: Rafael Andrade Buono
Filled example of ENA_sample
Creator: Rafael Andrade Buono
Submitter: Rafael Andrade Buono
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , title (String) *, study_type (Controlled Vocabulary - ENA study_type) *, study_abstract (String) *, pubmed_id (Integer) , submission_date (String)
Not specified
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , title (String) *, study_alias (String) *, sample_alias (String) *, design_description (String) *, library_name (String) *, library_strategy (Controlled Vocabulary - ENA library_strategy) *, library_source (Controlled Vocabulary - ENA library_source) *, library_selection (Controlled Vocabulary - ENA library_selection) *, library_layout (Controlled Vocabulary - ENA library_layout) *, insert_size (String) , library_construction_protocol (String) *, platform (Controlled Vocabulary - ENA platform) *, instrument_model (Controlled Vocabulary - ENA instrument_model) *, submission_date (String)
Not specified
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , experiment_alias (String) *, file_name (String) *, file_format (Controlled Vocabulary - ENA file_format) *, file_checksum (String) , submission_date (String)
Not specified
Used for capturing the necessary metadata for submission of raw nucleotide sequencing data to ENA. Necessary for the use of the ENA export feature. Based on ENA's Sample checklist ERC000011.
alias (String) *, status (Controlled Vocabulary - ENA export status attribute) *, accession (String) , title (String) *, scientific_name (String) , taxon_id (Integer) *, sample_description (String) *, cell_type (String) , dev_stage (String) , germline (String) , tissue_lib (String) , tissue_type (String) , collection_date (String) , isolation_source (String) , lat_lon (String) , collected_by (String) , geographic location (country and/or sea) (String) , geographic location (region and locality) (String) , identified_by (String) , environmental_sample (Controlled Vocabulary - ENA environmental_sample) , mating_type (String) , sex (String) , lab_host (String) , host scientific name (String) , bio_material (String) , culture_collection (String) , specimen_voucher (String) , cultivar (String) , ecotype (String) , isolate (String) , sub_species (String) , variety (String) , sub_strain (String) , cell_line (String) , serotype (String) , serovar (String) , strain (String) , submission_date (String)
Not specified
