ENA upload tool project
Experiment View
OverviewThis project describes the workflow to export the metadata to an ISA-JSON and submit to ENA, using the ENA Upload Tools.More information about the ENA Upload CLI can be found here: https://github.com/usegalaxy-eu/ena-upload-cli.
SEEK ID: https://datahub-usecase.elixir-belgium.org/projects/4
Public web page: Not specified
Organisms: No Organisms specified
FAIRDOM PALs: No PALs for this Project
Project created: 7th May 2024
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Related items
Projects: Default Project, ENA submission example, ENA upload tool project
Institutions: Default Institution, VIB
Projects: Default Project, ENA submission example, Expression data, ENA upload tool project
Institutions: Default Institution, VIB
Projects: ENA upload tool project
Institutions: VIB
This investigation holds the metadata to demonstrate the workflow with the ENA Upload Tool.
Submitter: Kevin De Pelseneer
Studies: Demo Study for ENA
Assays: DNA Sequencing assay, ENA DNA Sequencing Test case ENA, Library construction
This demo study is an example, demonstrating how the study metadata should be structured for a successful submission towards ENA.
Submitter: Kevin De Pelseneer
Investigation: Demonstration ENA Upload Tool
Assays: DNA Sequencing assay, ENA DNA Sequencing Test case ENA, Library construction
This is the stream of experimental assay, collecting the metadata of the experimental assays
Submitter: Kevin De Pelseneer
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Demonstration ENA Upload Tool
Study: Demo Study for ENA
Submitter: Kevin De Pelseneer
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Demonstration ENA Upload Tool
Study: Demo Study for ENA
Submitter: Kevin De Pelseneer
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Demonstration ENA Upload Tool
Study: Demo Study for ENA
Input (library_construction) (Registered Sample List) *, nucleic acid sequencing (String) *, Raw Data File (String) *, file_name (String) *, file_type (Controlled Vocabulary - file_type) *, file checksum (String) , accession (String) , submission_date (String) , status (Controlled Vocabulary - status)
Not specified
Input (Sample Name) (Registered Sample List) *, library_construction (String) *, library_construction_protocol (String) , title (String) *, design_description (String) , library_name (String) *, library_source (Controlled Vocabulary - library_source) *, library_strategy (Controlled Vocabulary - library_strategy) *, library_selection (Controlled Vocabulary - library_selection) *, library_layout (Controlled Vocabulary - library_layout) *, insert_size (String) , platform (Controlled Vocabulary - platform) *, instrument_model (Controlled Vocabulary - instrument_model) *, accession (String) , submission_date (String) , status (Controlled Vocabulary - status)
Not specified
Input (Source Name) (Registered Sample List) *, sample collection (String) *, Sample Name (String) *, title (String) *, sample_description (String) *, collection date (ENA custom date) *, accession (String) , submission_date (String) , status (Controlled Vocabulary - status)
Not specified
Source Name (String) *, geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea)) *, taxon_id (Integer) *
Not specified
