Demo ST for DNA Sequencing assay
View samplesTemplate
Attributes
| Name | Type | Description | PID  | Unit |
|---|---|---|---|---|
| Input (library_construction)* | Registered Sample List | Existing Samples in DataHub that represent input for this protocol. | - | - |
| nucleic acid sequencing* | String | type of assay or experimental step performed. | - | - |
| Raw Data File* | String | Name (or URI) of the raw data file generated by an assay. | - | - |
| file_name* | String | Name (or URI) of the raw data file generated by an assay. | - | - |
| file_type* | Controlled Vocabulary - file_type | The run data file model. | - | - |
| file checksum | String | The MD5 checksum of the file. | - | - |
| accession | String | ENA experiment accession code. Provided by ENA after submission. | - | - |
| submission_date | String | Date in which run was submitted to ENA. | - | - |
| status | Controlled Vocabulary - status | Status of submission to ENA. | - | - |
Tags
Not specified Creators and SubmitterViews: 47 Downloads: 11
Created: 14th May 2024 at 13:50
TagsThis item has not yet been tagged.
AttributionsNone
Related items
Projects: ENA upload tool project
Institutions: VIB
This project describes the workflow to export the metadata to an ISA-JSON and submit to ENA, using the ENA Upload Tools.More information about the ENA Upload CLI can be found here: https://github.com/usegalaxy-eu/ena-upload-cli.
Public web page: Not specified
This investigation holds the metadata to demonstrate the workflow with the ENA Upload Tool.
Submitter: Kevin De Pelseneer
Studies: Demo Study for ENA
Assays: DNA Sequencing assay, ENA DNA Sequencing Test case ENA, Library construction
Submitter: Kevin De Pelseneer
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Demonstration ENA Upload Tool
Study: Demo Study for ENA
Input (Registered Sample List) *, nucleic acid sequencing (String) *, Raw Data File (String) *, file_name (String) *, file_type (Controlled Vocabulary - file_type) *, file checksum (String) , accession (String) , submission_date (String) , status (Controlled Vocabulary - status)
