Demo ST for library construction assay
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Attributes
| Name | Type | Description | PID  | Unit |
|---|---|---|---|---|
| Input (Sample Name)* | Registered Sample List | Existing Samples in DataHub that represent input for this protocol. | - | - |
| library_construction* | String | Type of assay or experimental step performed. | - | - |
| library_construction_protocol | String | Free form text describing the protocol by which the sequencing library was constructed. | - | - |
| title* | String | Short text that can be used to call out experiment records in searches or in displays. | - | - |
| design_description | String | The design of the library including details of how it was constructed. | - | - |
| library_name* | String | Name of the library to be published in ENA | - | - |
| library_source* | Controlled Vocabulary - library_source | The LIBRARY_SOURCE specifies the type of source material that is being sequenced. (SRA 1.2 documentation) | - | - |
| library_strategy* | Controlled Vocabulary - library_strategy | Sequencing technique intended for this library (SRA 1.2 documentation) | - | - |
| library_selection* | Controlled Vocabulary - library_selection | Whether any method was used to select for or against, enrich, or screen the material being sequenced. (SRA 1.2 documentation) | - | - |
| library_layout* | Controlled Vocabulary - library_layout | specifies whether to expect single, paired, or other configuration of reads. In the case of paired reads, information about the relative distance and orientation is specified. | - | - |
| insert_size | String | Insert size for paired reads. | - | - |
| platform* | Controlled Vocabulary - platform | a parameter to report the sequencing instrument model and make | - | - |
| instrument_model* | Controlled Vocabulary - instrument_model | a parameter to report the sequencing instrument model and make | - | - |
| accession | String | ENA experiment accession code. Provided by ENA after submission. | - | - |
| submission_date | String | Date in which run was submitted to ENA. | - | - |
| status | Controlled Vocabulary - status | Status of submission to ENA. | - | - |
Tags
Not specified Creators and SubmitterViews: 64 Downloads: 18
Created: 14th May 2024 at 13:45
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Related items
Projects: ENA upload tool project
Institutions: VIB
This project describes the workflow to export the metadata to an ISA-JSON and submit to ENA, using the ENA Upload Tools.More information about the ENA Upload CLI can be found here: https://github.com/usegalaxy-eu/ena-upload-cli.
Public web page: Not specified
This investigation holds the metadata to demonstrate the workflow with the ENA Upload Tool.
Submitter: Kevin De Pelseneer
Studies: Demo Study for ENA
Assays: DNA Sequencing assay, ENA DNA Sequencing Test case ENA, Library construction
Submitter: Kevin De Pelseneer
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Demonstration ENA Upload Tool
Study: Demo Study for ENA
Input (Registered Sample List) *, library_construction (String) *, library_construction_protocol (String) , title (String) *, design_description (String) , library_name (String) *, library_source (Controlled Vocabulary - library_source) *, library_strategy (Controlled Vocabulary - library_strategy) *, library_selection (Controlled Vocabulary - library_selection) *, library_layout (Controlled Vocabulary - library_layout) *, insert_size (String) , platform (Controlled Vocabulary - platform) *, instrument_model (Controlled Vocabulary - instrument_model) *, accession (String) , submission_date (String) , status (Controlled Vocabulary - status)
