Experiment Sample Templates

Attributes: Input (Registered Sample List) *, nucleic acid sequencing (String) *, Raw Data File (String) *, file_name (String) *, file_type (Controlled Vocabulary - file_type) *, file checksum (String) , accession (String) , submission_date (String) , status (Controlled Vocabulary - status)

Attributes: Input (Registered Sample List) *, sample collection (String) *, Sample Name (String) *, title (String) *, sample_description (String) *, collection date (ENA custom date) *, accession (String) , submission_date (String) , status (Controlled Vocabulary - status)

Attributes: Input (Registered Sample List) *, library_construction (String) *, library_construction_protocol (String) , title (String) *, design_description (String) , library_name (String) *, library_source (Controlled Vocabulary - library_source) *, library_strategy (Controlled Vocabulary - library_strategy) *, library_selection (Controlled Vocabulary - library_selection) *, library_layout (Controlled Vocabulary - library_layout) *, insert_size (String) , platform (Controlled Vocabulary - platform) *, instrument_model (Controlled Vocabulary - instrument_model) *, accession (String) , submission_date (String) , status (Controlled Vocabulary - status)

Attributes: Source Name (String) *, geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea)) *, taxon_id (Integer) *

Attributes: Source Name (String) *, Title (String) *, Description (String) *, tax_id (String) *, organism (String) , ploidy (Controlled Vocabulary - ploidy) *, number of replicons (Integer) *, extrachromosomal elements (Integer) , estimated size (Integer) *, collected_by (String) , collection date (String) *, geographic location (altitude) (String) , geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea)) *, geographic location (latitude) (String) *, geographic location (longitude) (String) *, geographic location (region and locality) (String) , identified_by (String) , geographic location (depth) (String) , environment (biome) (Controlled Vocabulary - environment (biome)) , environment (feature) (String) , geographic location (elevation) (String) , source material identifiers (String) , isolation and growth condition (String) *, propagation (String) , plant structure (Controlled Vocabulary - plant structure) *, plant developmental stage (Controlled Vocabulary - plant developmental stage) *, sampled age (String) , sample phenotype (String) , sample health state (Controlled Vocabulary - sample health state) , sample disease status (String) , sample disease stage (String) , sample wet mass (String) , sample dry mass (String) , sample height (String) , sample length (String) , growth facility (Controlled Vocabulary - growth facility) , sample capture status (Controlled Vocabulary - sample capture status) , genotype (String) , genetic modification (String) , organism common name (String) , subspecific genetic lineage rank (String) , subspecific genetic lineage name (String) , biological status (String) , organism phenotype (String) , ancestral data (String) , source material description (String) , biotic relationship (String) , growth habit (Controlled Vocabulary - growth habit) , plant sex (String) , climate environment (String) , gaseous environment (String) , seasonal environment (String) , soil_taxonomic/FAO classification (String) , soil_taxonomic/local classification (String) , soil_taxonomic/local classification method (String) , soil type (Controlled Vocabulary - soil type) , soil type method (String) , drainage classification (Controlled Vocabulary - drainage classification) , texture (String) , texture method (String) , soil water content (String) , soil pH (String) , plant growth medium (String) *, rooting conditions (String) , culture rooting medium (String) , rooting medium macronutrients (String) , rooting medium micronutrients (String) , rooting medium organic supplements (String) , rooting medium carbon (String) , rooting medium regulators (String) , rooting medium solidifier (String) , rooting medium pH (String) , air temperature regimen (String) , antibiotic regimen (String) , chemical mutagen (String) , fertilizer regimen (String) , fungicide regimen (String) , gravity (String) , growth hormone regimen (String) , herbicide regimen (String) , humidity regimen (String) , mineral nutrient regimen (String) , non-mineral nutrient regimen (String) , pesticide regimen (String) , pH regimen (String) , radiation regimen (String) , rainfall regimen (String) , salt regimen (String) , standing water regimen (String) , watering regimen (String) , water temperature regimen (String) , plant treatment (String) , light regimen (String) , biotic regimen (String) , mechanical damage (String) , chemical administration (String) , perturbation (String) , submission date (String) , status (Controlled Vocabulary - status) , accession (String)

Attributes: Input (Registered Sample List) *, sequence assembly (String) *, Normalization Name (String) , Data Transformation Name (String) , Derived Data File (String)

Attributes: Source Name (String) *, Title (String) *, Description (String) *, tax_id (String) *, organism (String) , cell_type (String) , dev_stage (String) , germline (String) , tissue_lib (String) , tissue_type (String) , collection_date (String) , isolation_source (String) , lat_lon (String) , collected_by (String) , geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea)) , geographic location (region and locality) (String) , identified_by (String) , environmental_sample (Controlled Vocabulary - environmental_sample) , mating_type (String) , sex (String) , lab_host (String) , host scientific name (String) , bio_material (String) , culture_collection (String) , specimen_voucher (String) , cultivar (String) , ecotype (String) , isolate (String) , sub_species (String) , variety (String) , sub_strain (String) , cell_line (String) , serotype (String) , serovar (String) , strain (String) , submission date (String) , status (Controlled Vocabulary - status) , accession (String)